HL_5U4I_036

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5U4I|1|A|A|1453, 5U4I|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_036 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.3294

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5U4I|1|A|C|1451
5U4I|1|A|G|1452
5U4I|1|A|A|1453
5U4I|1|A|C|1454
5U4I|1|A|G|1455
5U4I|1|A|G|1456
5U4I|1|A|U|1457
5U4I|1|A|U|1458
5U4I|1|A|G|1459

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17