HL_5U4I_051

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

5U4I|1|A|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_051 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.3989

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

5U4I|1|A|C|2143
5U4I|1|A|G|2144
5U4I|1|A|C|2145
5U4I|1|A|C|2146
5U4I|1|A|A|2147
5U4I|1|A|G|2148

Current chains

Chain A

23S rRNA

Nearby chains

Chain k

30S ribosomal protein S11