3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
5U4I|1|A|A|2268, 5U4I|1|A|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5U4I_054 not in the Motif Atlas
Homologous match to HL_7RQB_054
Geometric discrepancy: 0.1487
The information below is about HL_7RQB_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.6
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
7

Unit IDs

5U4I|1|A|C|2264
5U4I|1|A|U|2265
5U4I|1|A|A|2266
5U4I|1|A|A|2267
5U4I|1|A|A|2268
5U4I|1|A|G|2269
5U4I|1|A|A|2270
5U4I|1|A|G|2271
5U4I|1|A|U|2272
5U4I|1|A|A|2273
5U4I|1|A|A|2274
5U4I|1|A|C|2275
5U4I|1|A|G|2276

Current chains

Chain A
23S rRNA

Nearby chains

Chain N
50S ribosomal protein L16
Chain X
50S ribosomal protein L27

Coloring options:


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