HL_5U4I_055

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_055 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1675

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5U4I|1|A|G|2303
5U4I|1|A|G|2304
5U4I|1|A|U|2305
5U4I|1|A|C|2306
5U4I|1|A|G|2307
5U4I|1|A|G|2308
5U4I|1|A|A|2309
5U4I|1|A|C|2310
5U4I|1|A|A|2311
5U4I|1|A|U|2312
5U4I|1|A|C|2313

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5