HL_5U4I_059

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

5U4I|1|A|A|2406

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_059 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1611

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5U4I|1|A|U|2404
5U4I|1|A|G|2405
5U4I|1|A|A|2406
5U4I|1|A|A|2407
5U4I|1|A|U|2408
5U4I|1|A|G|2409
5U4I|1|A|G|2410
5U4I|1|A|A|2411
5U4I|1|A|A|2412
5U4I|1|A|G|2413

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15