HL_5U4I_060

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_060 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1648

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5U4I|1|A|A|2471
5U4I|1|A|G|2472
5U4I|1|A|U|2473
5U4I|1|A|U|2474
5U4I|1|A|C|2475
5U4I|1|A|A|2476
5U4I|1|A|U|2477
5U4I|1|A|A|2478
5U4I|1|A|U|2479

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain N

50S ribosomal protein L16

Chain v

Peptide chain release factor 2