HL_5U4I_096

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5U4I|1|a|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_096 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1302

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5U4I|1|a|G|1089
5U4I|1|a|U|1090
5U4I|1|a|U|1091
5U4I|1|a|A|1092
5U4I|1|a|A|1093
5U4I|1|a|G|1094
5U4I|1|a|U|1095
5U4I|1|a|C|1096

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7