HL_5U4I_110

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

5U4I|1|A|U|958, 5U4I|1|A|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_110 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.224

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5U4I|1|A|PSU|955
5U4I|1|A|G|956
5U4I|1|A|C|957
5U4I|1|A|U|958
5U4I|1|A|A|959
5U4I|1|A|A|960
5U4I|1|A|C|961
5U4I|1|A|G|962

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L16