HL_5U4I_112

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

5U4I|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_112 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3534

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

5U4I|1|a|G|258
5U4I|1|a|G|259
5U4I|1|a|G|260
5U4I|1|a|U|261
5U4I|1|a|A|262
5U4I|1|a|A|263
5U4I|1|a|C|264
5U4I|1|a|G|265
5U4I|1|a|G|266
5U4I|1|a|C|267
5U4I|1|a|U|268

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20