3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5U9F_033 not in the Motif Atlas
Homologous match to HL_5J7L_167
Geometric discrepancy: 0.1117
The information below is about HL_5J7L_167
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

5U9F|1|01|C|1363
5U9F|1|01|G|1364
5U9F|1|01|A|1365
5U9F|1|01|A|1366
5U9F|1|01|A|1367
5U9F|1|01|G|1368

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 26
50S ribosomal protein L28
Chain 32
50S ribosomal protein L34

Coloring options:


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