HL_5U9F_087
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5U9F|1|A|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5U9F_087 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.1118
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5U9F|1|A|G|786
5U9F|1|A|A|787
5U9F|1|A|U|788
5U9F|1|A|U|789
5U9F|1|A|A|790
5U9F|1|A|G|791
5U9F|1|A|A|792
5U9F|1|A|U|793
5U9F|1|A|A|794
5U9F|1|A|C|795
5U9F|1|A|C|796
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 30S ribosomal protein S11
- Chain U
- 30S ribosomal protein S21
- Chain V
- truncated mRNA
- Chain W
- Transfer RNA; tRNA
- Chain X
- Transfer RNA; tRNA
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