HL_5UQ8_012

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

5UQ8|1|A|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.133

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5UQ8|1|A|G|327
5UQ8|1|A|U|328
5UQ8|1|A|G|329
5UQ8|1|A|A|330
5UQ8|1|A|A|331
5UQ8|1|A|A|332
5UQ8|1|A|G|333
5UQ8|1|A|C|334
5UQ8|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain Y

50S ribosomal protein L24