HL_5UQ8_034

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

5UQ8|1|A|G|1325, 5UQ8|1|A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_034 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1251

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5UQ8|1|A|G|1324
5UQ8|1|A|G|1325
5UQ8|1|A|U|1326
5UQ8|1|A|C|1327
5UQ8|1|A|G|1328
5UQ8|1|A|U|1329
5UQ8|1|A|C|1330

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L17

Chain W

50S ribosomal protein L22