HL_5UQ8_053

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

5UQ8|1|A|G|2206, 5UQ8|1|A|U|2218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_053 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.4935

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

5UQ8|1|A|C|2205
5UQ8|1|A|G|2206
5UQ8|1|A|G|2207
5UQ8|1|A|A|2208
5UQ8|1|A|U|2218
5UQ8|1|A|G|2219

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain D

50S ribosomal protein L2