HL_5UQ8_055

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5UQ8|1|A|A|2268, 5UQ8|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_055 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1311

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5UQ8|1|A|C|2264
5UQ8|1|A|U|2265
5UQ8|1|A|A|2266
5UQ8|1|A|A|2267
5UQ8|1|A|A|2268
5UQ8|1|A|A|2269
5UQ8|1|A|G|2270
5UQ8|1|A|G|2271
5UQ8|1|A|U|2272
5UQ8|1|A|A|2273
5UQ8|1|A|A|2274
5UQ8|1|A|C|2275
5UQ8|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain Q

50S ribosomal protein L16