HL_5UQ8_063

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

C(2MU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_063 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.131

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5UQ8|1|A|C|2551
5UQ8|1|A|2MU|2552
5UQ8|1|A|G|2553
5UQ8|1|A|U|2554
5UQ8|1|A|U|2555
5UQ8|1|A|C|2556
5UQ8|1|A|G|2557

Current chains

Chain A

23S rRNA

Nearby chains