HL_5UQ8_080

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_080 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.122

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5UQ8|1|a|C|320
5UQ8|1|a|A|321
5UQ8|1|a|C|322
5UQ8|1|a|U|323
5UQ8|1|a|G|324
5UQ8|1|a|A|325
5UQ8|1|a|G|326
5UQ8|1|a|A|327
5UQ8|1|a|C|328
5UQ8|1|a|A|329
5UQ8|1|a|C|330
5UQ8|1|a|G|331
5UQ8|1|a|G|332
5UQ8|1|a|G|333

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20