HL_5UQ8_095

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_095 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2609

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5UQ8|1|a|C|1029
5UQ8|1|a|C|1030|||A
5UQ8|1|a|G|1030|||B
5UQ8|1|a|C|1030|||C
5UQ8|1|a|G|1030|||D
5UQ8|1|a|A|1030|||E
5UQ8|1|a|G|1031
5UQ8|1|a|G|1032

Current chains

Chain a

16S rRNA

Nearby chains