HL_5UQ8_106
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGCCCGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 5UQ8|1|y|C|16, 5UQ8|1|y|G|18, 5UQ8|1|y|G|19, 5UQ8|1|y|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UQ8_106 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.132
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5UQ8|1|y|C|13
5UQ8|1|y|A|14
5UQ8|1|y|G|15
5UQ8|1|y|C|16
5UQ8|1|y|C|17|||A
5UQ8|1|y|C|17|||B
5UQ8|1|y|G|18
5UQ8|1|y|G|19
5UQ8|1|y|U|20
5UQ8|1|y|A|21
5UQ8|1|y|G|22
Current chains
- Chain y
- P-site tRNA fMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 50S ribosomal protein L5
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