HL_5UQ8_108
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UQ8_108 not in the Motif Atlas
- Homologous match to HL_4V9Q_215
- Geometric discrepancy: 0.168
- The information below is about HL_4V9Q_215
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
5UQ8|1|y|G|53
5UQ8|1|y|U|54
5UQ8|1|y|U|55
5UQ8|1|y|C|56
5UQ8|1|y|A|57
5UQ8|1|y|A|58
5UQ8|1|y|A|59
5UQ8|1|y|U|60
5UQ8|1|y|C|61
Current chains
- Chain y
- P-site tRNA fMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 50S ribosomal protein L5
- Chain Q
- 50S ribosomal protein L16
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