HL_5UQ8_113
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- G(PSU)AAC(5MU)A(PSU)AA(4OC)
- Length
- 11 nucleotides
- Bulged bases
- 5UQ8|1|A|A|1913
- QA status
- Modified nucleotides: PSU, 5MU, 4OC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UQ8_113 not in the Motif Atlas
- Homologous match to HL_5J7L_181
- Geometric discrepancy: 0.2409
- The information below is about HL_5J7L_181
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5UQ8|1|A|G|1910
5UQ8|1|A|PSU|1911
5UQ8|1|A|A|1912
5UQ8|1|A|A|1913
5UQ8|1|A|C|1914
5UQ8|1|A|5MU|1915
5UQ8|1|A|A|1916
5UQ8|1|A|PSU|1917
5UQ8|1|A|A|1918
5UQ8|1|A|A|1919
5UQ8|1|A|4OC|1920
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain y
- Transfer RNA; tRNA
Coloring options: