3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AGAGAAU
Length
7 nucleotides
Bulged bases
5UYK|1|01|A|1634
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5UYK_040 not in the Motif Atlas
Homologous match to HL_5J7L_174
Geometric discrepancy: 0.1418
The information below is about HL_5J7L_174
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

5UYK|1|01|A|1630
5UYK|1|01|G|1631
5UYK|1|01|A|1632
5UYK|1|01|G|1633
5UYK|1|01|A|1634
5UYK|1|01|A|1635
5UYK|1|01|U|1636

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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