HL_5UYN_025

3D structure

PDB id

5UYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

5UYN|1|01|U|958, 5UYN|1|01|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYN_025 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1177

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5UYN|1|01|U|955
5UYN|1|01|G|956
5UYN|1|01|C|957
5UYN|1|01|U|958
5UYN|1|01|A|959
5UYN|1|01|A|960
5UYN|1|01|C|961
5UYN|1|01|G|962

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 02

5S ribosomal RNA; 5S rRNA

Chain 15

50S ribosomal protein L16