HL_5UYN_060
3D structure
- PDB id
- 5UYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGAAGUAG
- Length
- 8 nucleotides
- Bulged bases
- 5UYN|1|01|G|2529
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYN_060 not in the Motif Atlas
- Homologous match to HL_5J7L_194
- Geometric discrepancy: 0.1429
- The information below is about HL_5J7L_194
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
5UYN|1|01|U|2528
5UYN|1|01|G|2529
5UYN|1|01|A|2530
5UYN|1|01|A|2531
5UYN|1|01|G|2532
5UYN|1|01|U|2533
5UYN|1|01|A|2534
5UYN|1|01|G|2535
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 08
- 50S ribosomal protein L6
- Chain 34
- 50S ribosomal protein L36
- Chain Y
- Transfer RNA; tRNA
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