HL_5UYQ_040

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

5UYQ|1|01|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_040 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1613

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5UYQ|1|01|A|1630
5UYQ|1|01|G|1631
5UYQ|1|01|A|1632
5UYQ|1|01|G|1633
5UYQ|1|01|A|1634
5UYQ|1|01|A|1635
5UYQ|1|01|U|1636

Current chains

Chain 01

23S ribosomal RNA

Nearby chains