HL_5UYQ_087
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5UYQ|1|A|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYQ_087 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.1454
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5UYQ|1|A|G|786
5UYQ|1|A|A|787
5UYQ|1|A|U|788
5UYQ|1|A|U|789
5UYQ|1|A|A|790
5UYQ|1|A|G|791
5UYQ|1|A|A|792
5UYQ|1|A|U|793
5UYQ|1|A|A|794
5UYQ|1|A|C|795
5UYQ|1|A|C|796
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 30S ribosomal protein S11
- Chain U
- 30S ribosomal protein S21
- Chain V
- mRNA
- Chain W
- Transfer RNA; tRNA
- Chain X
- Transfer RNA; tRNA
Coloring options: