HL_5UZ4_006

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5UZ4|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UZ4_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.2471

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5UZ4|1|A|G|259
5UZ4|1|A|G|260
5UZ4|1|A|U|261
5UZ4|1|A|A|262
5UZ4|1|A|A|263
5UZ4|1|A|C|264
5UZ4|1|A|G|265
5UZ4|1|A|G|266
5UZ4|1|A|C|267

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20