HL_5UZ4_020

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UZ4_020 not in the Motif Atlas

Homologous match to HL_5J7L_020

Geometric discrepancy: 0.2127

The information below is about HL_5J7L_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5UZ4|1|A|C|897
5UZ4|1|A|G|898
5UZ4|1|A|C|899
5UZ4|1|A|A|900
5UZ4|1|A|A|901
5UZ4|1|A|G|902

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains