HL_5UZ4_024
3D structure
- PDB id
- 5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UUGUGAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UZ4_024 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.3905
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5UZ4|1|A|U|1075
5UZ4|1|A|U|1076
5UZ4|1|A|G|1077
5UZ4|1|A|U|1078
5UZ4|1|A|G|1079
5UZ4|1|A|A|1080
5UZ4|1|A|A|1081
5UZ4|1|A|A|1082
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- 30S ribosomal protein S5
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