HL_5V7Q_016

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUCUCCG

Length

7 nucleotides

Bulged bases

5V7Q|1|A|C|642, 5V7Q|1|A|C|643

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_016 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2525

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5V7Q|1|A|C|638
5V7Q|1|A|U|639
5V7Q|1|A|C|640
5V7Q|1|A|U|641
5V7Q|1|A|C|642
5V7Q|1|A|C|643
5V7Q|1|A|G|644

Current chains

Chain A

23S rRNA

Nearby chains