HL_5V7Q_030

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_030 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.1856

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5V7Q|1|A|G|1353
5V7Q|1|A|G|1354
5V7Q|1|A|U|1355
5V7Q|1|A|G|1356
5V7Q|1|A|A|1357
5V7Q|1|A|C|1358

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain R

LSU ribosomal protein L21p