HL_5V7Q_045

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUUACUAAAAAC

Length

13 nucleotides

Bulged bases

5V7Q|1|A|A|2014, 5V7Q|1|A|C|2015, 5V7Q|1|A|U|2016, 5V7Q|1|A|A|2020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_045 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.3082

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

5V7Q|1|A|G|2010
5V7Q|1|A|U|2011
5V7Q|1|A|U|2012
5V7Q|1|A|U|2013
5V7Q|1|A|A|2014
5V7Q|1|A|C|2015
5V7Q|1|A|U|2016
5V7Q|1|A|A|2017
5V7Q|1|A|A|2018
5V7Q|1|A|A|2019
5V7Q|1|A|A|2020
5V7Q|1|A|A|2021
5V7Q|1|A|C|2022

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2