HL_5V7Q_052
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUGAAUCGG
- Length
- 10 nucleotides
- Bulged bases
- 5V7Q|1|A|G|2448, 5V7Q|1|A|A|2449, 5V7Q|1|A|U|2451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5V7Q_052 not in the Motif Atlas
- Homologous match to HL_4WF9_069
- Geometric discrepancy: 0.5737
- The information below is about HL_4WF9_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_83003.1
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5V7Q|1|A|C|2445
5V7Q|1|A|C|2446
5V7Q|1|A|U|2447
5V7Q|1|A|G|2448
5V7Q|1|A|A|2449
5V7Q|1|A|A|2450
5V7Q|1|A|U|2451
5V7Q|1|A|C|2452
5V7Q|1|A|G|2453
5V7Q|1|A|G|2454
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain X
- 50S ribosomal protein L28
Coloring options: