HL_5V7Q_075

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUGAGAACCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V7Q_075 not in the Motif Atlas

Geometric match to HL_4TUE_218

Geometric discrepancy: 0.3729

The information below is about HL_4TUE_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5V7Q|1|A|A|1411
5V7Q|1|A|G|1412
5V7Q|1|A|U|1413
5V7Q|1|A|G|1414
5V7Q|1|A|A|1415
5V7Q|1|A|G|1416
5V7Q|1|A|A|1417
5V7Q|1|A|A|1418
5V7Q|1|A|C|1419
5V7Q|1|A|C|1420
5V7Q|1|A|U|1421

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22