HL_5V8I_180

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

5V8I|1|2a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V8I_180 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1445

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5V8I|1|2a|G|259
5V8I|1|2a|G|260
5V8I|1|2a|U|261
5V8I|1|2a|A|262
5V8I|1|2a|A|263
5V8I|1|2a|U|264
5V8I|1|2a|G|265
5V8I|1|2a|G|266
5V8I|1|2a|C|267

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20