HL_5V8I_218

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

G(PSU)AAC(5MU)A(PSU)AA(OMC)

Length

11 nucleotides

Bulged bases

5V8I|1|2A|A|1913

QA status

Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V8I_218 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.3416

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

5V8I|1|2A|G|1910
5V8I|1|2A|PSU|1911
5V8I|1|2A|A|1912
5V8I|1|2A|A|1913
5V8I|1|2A|C|1914
5V8I|1|2A|5MU|1915
5V8I|1|2A|A|1916
5V8I|1|2A|PSU|1917
5V8I|1|2A|A|1918
5V8I|1|2A|A|1919
5V8I|1|2A|OMC|1920

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2y

Ribosome-associated inhibitor A