HL_5V93_005

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAUAUAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.3364

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5V93|1|A|U|160
5V93|1|A|G|161
5V93|1|A|A|162
5V93|1|A|A|163
5V93|1|A|U|164
5V93|1|A|A|165
5V93|1|A|U|166
5V93|1|A|A|167
5V93|1|A|U|168
5V93|1|A|A|169
5V93|1|A|G|170

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28