HL_5V93_102

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUCAGCAACGC

Length

12 nucleotides

Bulged bases

5V93|1|a|A|1356, 5V93|1|a|C|1357

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_102 not in the Motif Atlas

Homologous match to HL_5J7L_029

Geometric discrepancy: 0.2617

The information below is about HL_5J7L_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5V93|1|a|G|1348
5V93|1|a|A|1349
5V93|1|a|U|1350
5V93|1|a|C|1351
5V93|1|a|A|1352
5V93|1|a|G|1353
5V93|1|a|C|1354
5V93|1|a|A|1355
5V93|1|a|A|1356
5V93|1|a|C|1357
5V93|1|a|G|1358
5V93|1|a|C|1359

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z