HL_5VP2_035
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUAAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 5VP2|1|1A|U|1442, 5VP2|1|1A|U|1443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VP2_035 not in the Motif Atlas
- Homologous match to HL_9DFE_034
- Geometric discrepancy: 0.0785
- The information below is about HL_9DFE_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77449.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5VP2|1|1A|G|1435
5VP2|1|1A|U|1436
5VP2|1|1A|U|1437
5VP2|1|1A|A|1438
5VP2|1|1A|A|1439
5VP2|1|1A|U|1440
5VP2|1|1A|A|1441
5VP2|1|1A|U|1442
5VP2|1|1A|U|1443
5VP2|1|1A|C|1444
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1X
- 50S ribosomal protein L23
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