HL_5VP2_134
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 5VP2|1|2A|U|747, 5VP2|1|2A|A|751, 5VP2|1|2A|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VP2_134 not in the Motif Atlas
- Homologous match to HL_9DFE_021
- Geometric discrepancy: 0.1051
- The information below is about HL_9DFE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5VP2|1|2A|G|744
5VP2|1|2A|G|745
5VP2|1|2A|A|746
5VP2|1|2A|U|747
5VP2|1|2A|G|748
5VP2|1|2A|C|749
5VP2|1|2A|A|750
5VP2|1|2A|A|751
5VP2|1|2A|A|752
5VP2|1|2A|C|753
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L32
- Chain 27
- 50S ribosomal protein L34
- Chain 2E
- 50S ribosomal protein L3
- Chain 2W
- 50S ribosomal protein L22
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