HL_5VP2_164

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5VP2|1|2A|A|2268, 5VP2|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VP2_164 not in the Motif Atlas

Homologous match to HL_9DFE_052

Geometric discrepancy: 0.083

The information below is about HL_9DFE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5VP2|1|2A|C|2264
5VP2|1|2A|U|2265
5VP2|1|2A|A|2266
5VP2|1|2A|A|2267
5VP2|1|2A|A|2268
5VP2|1|2A|A|2269
5VP2|1|2A|G|2270
5VP2|1|2A|G|2271
5VP2|1|2A|U|2272
5VP2|1|2A|A|2273
5VP2|1|2A|A|2274
5VP2|1|2A|C|2275
5VP2|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16