HL_5VPO_212

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

5VPO|1|QA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_212 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1113

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5VPO|1|QA|G|963
5VPO|1|QA|A|964
5VPO|1|QA|A|965
5VPO|1|QA|G|966
5VPO|1|QA|C|967
5VPO|1|QA|A|968
5VPO|1|QA|A|969
5VPO|1|QA|C|970
5VPO|1|QA|G|971
5VPO|1|QA|C|972

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QI

30S ribosomal protein S9

Chain QJ

30S ribosomal protein S10

Chain QM

30S ribosomal protein S13

Chain QN

30S ribosomal protein S14 type Z

Chain QV

P-site ASL SufA6