HL_5VYC_011

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

5VYC|1|i1|A|500, 5VYC|1|i1|C|502, 5VYC|1|i1|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_011 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3209

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5VYC|1|i1|C|498
5VYC|1|i1|G|499
5VYC|1|i1|A|500
5VYC|1|i1|C|501
5VYC|1|i1|C|502
5VYC|1|i1|C|503
5VYC|1|i1|G|504

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain E1

40S ribosomal protein S4, X isoform

Chain Y1

40S ribosomal protein S24