HL_5VYC_099

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_099 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.4154

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5VYC|1|i3|G|1847
5VYC|1|i3|U|1848
5VYC|1|i3|G|1849
5VYC|1|i3|A|1850
5VYC|1|i3|A|1851
5VYC|1|i3|C|1852

Current chains

Chain i3

Human 18S ribosomal RNA

Nearby chains

Chain j3

60S ribosomal protein L41

Chain l3

Density-regulated protein