HL_5VYC_128

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_128 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.349

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5VYC|1|i4|C|1565
5VYC|1|i4|G|1566
5VYC|1|i4|G|1567
5VYC|1|i4|C|1568
5VYC|1|i4|A|1569
5VYC|1|i4|G|1570

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain P4

40S ribosomal protein S15

Chain S4

40S ribosomal protein S18

Chain T4

40S ribosomal protein S19