HL_5VYC_135

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5VYC|1|i5|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_135 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.3838

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5VYC|1|i5|G|156
5VYC|1|i5|U|157
5VYC|1|i5|A|158
5VYC|1|i5|A|159
5VYC|1|i5|U|160
5VYC|1|i5|U|161
5VYC|1|i5|C|162

Current chains

Chain i5

Human 18S ribosomal RNA

Nearby chains

Chain G5

40S ribosomal protein S6

Chain Y5

40S ribosomal protein S24