HL_5VYC_145

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UCCACUUUAAAUCCUUCCG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_145 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3237

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5VYC|1|i5|U|566
5VYC|1|i5|C|567
5VYC|1|i5|C|568
5VYC|1|i5|A|569
5VYC|1|i5|C|570
5VYC|1|i5|U|571
5VYC|1|i5|U|572
5VYC|1|i5|U|573
5VYC|1|i5|A|574
5VYC|1|i5|A|575
5VYC|1|i5|A|576
5VYC|1|i5|U|577
5VYC|1|i5|C|578
5VYC|1|i5|C|579
5VYC|1|i5|U|580
5VYC|1|i5|U|581
5VYC|1|i5|C|582
5VYC|1|i5|C|583
5VYC|1|i5|G|584

Current chains

Chain i5

Human 18S ribosomal RNA

Nearby chains

Chain J5

40S ribosomal protein S9

Chain Y5

40S ribosomal protein S24