HL_5VYC_174
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 5VYC|1|i6|C|450, 5VYC|1|i6|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VYC_174 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1148
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5VYC|1|i6|C|441
5VYC|1|i6|C|442
5VYC|1|i6|U|443
5VYC|1|i6|G|444
5VYC|1|i6|A|445
5VYC|1|i6|G|446
5VYC|1|i6|A|447
5VYC|1|i6|A|448
5VYC|1|i6|A|449
5VYC|1|i6|C|450
5VYC|1|i6|G|451
5VYC|1|i6|G|452
Current chains
- Chain i6
- Human 18S ribosomal RNA
Nearby chains
- Chain E6
- 40S ribosomal protein S4, X isoform
- Chain G6
- 40S ribosomal protein S6
- Chain I6
- 40S ribosomal protein S8
- Chain Y6
- 40S ribosomal protein S24
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