HL_5VYC_183
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VYC_183 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.2102
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5VYC|1|i6|A|957
5VYC|1|i6|G|958
5VYC|1|i6|G|959
5VYC|1|i6|U|960
5VYC|1|i6|G|961
5VYC|1|i6|A|962
5VYC|1|i6|A|963
5VYC|1|i6|A|964
5VYC|1|i6|U|965
5VYC|1|i6|U|966
Current chains
- Chain i6
- Human 18S ribosomal RNA
Nearby chains
- Chain F6
- 40S ribosomal protein S5
- Chain I1
- 40S ribosomal protein S8
- Chain O6
- 40S ribosomal protein S14
- Chain k6
- Malignant T-cell-amplified sequence 1
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