HL_5VYC_195
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 5VYC|1|i6|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VYC_195 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2403
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5VYC|1|i6|A|1614
5VYC|1|i6|U|1615
5VYC|1|i6|U|1616
5VYC|1|i6|G|1617
5VYC|1|i6|C|1618
5VYC|1|i6|A|1619
5VYC|1|i6|A|1620
5VYC|1|i6|U|1621
5VYC|1|i6|U|1622
5VYC|1|i6|A|1623
5VYC|1|i6|U|1624
5VYC|1|i6|U|1625
Current chains
- Chain i6
- Human 18S ribosomal RNA
Nearby chains
- Chain P6
- 40S ribosomal protein S15
- Chain S6
- 40S ribosomal protein S18
- Chain T6
- 40S ribosomal protein S19
- Chain d6
- 40S ribosomal protein S29
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